Whisk flour, baking soda, and salt in a medium bowl.
In a large bowl, cream butter, brown sugar, granulated sugar, and vanilla using a spatula or mixer on low speed for 1–2 minutes until smooth and slightly fluffy.
Mix in honey, then add the egg and stir until fully incorporated.
Add the flour mixture all at once. Stir until almost combined, then fold in chocolate chunks. The dough should be soft and slightly moist.
Cover dough directly with plastic wrap and refrigerate 8–24 hours for best Chocolate Chip Cookies Bakery Style texture and flavor.
Preheat oven to 350°F (175°C). Line two baking sheets with parchment paper.
Scoop dough into 16 balls (about 1.35 oz each). Do not flatten.
Top with extra chocolate chunks and bake 6 cookies per sheet for 9–11 minutes until edges are golden and centers are soft.
Cool 2 minutes on the baking sheet, then transfer to a wire rack. Sprinkle with flaky sea salt if desired.