These Peanut Butter and Jelly Muffins are a wholesome twist on the classic PB&J sandwich. They’re soft, moist, naturally sweetened, and filled with creamy peanut butter and swirls of strawberry jam. Made with gluten-free oats, almond meal, and applesauce, these muffins are perfect for breakfast, afternoon snacks, or meal prep. They’re easy to make and loved by both kids and adults.
Why You’ll Love This Recipe
These Peanut Butter and Jelly Muffins are everything you want in a homemade muffin. They’re tender, flavorful, and naturally sweetened with maple syrup and coconut sugar. The combination of peanut butter and strawberry jam creates a nostalgic flavor everyone recognizes, while wholesome ingredients make them a healthier choice. They’re gluten-free, vegan-friendly, freezer-friendly, and perfect for busy mornings or lunchboxes.
Ingredients

- 2 tablespoons flaxseed meal
- 5 tablespoons water
- 1/4 cup maple syrup or agave nectar
- 1/3 cup coconut sugar
- 1/4 cup melted coconut oil, grapeseed oil, or olive oil
- 3/4 cup unsweetened applesauce
- 1/2 cup creamy or crunchy peanut butter
- 1/4 teaspoon sea salt
- 1 1/2 teaspoons baking soda
- 1/2 teaspoon baking powder
- 1 teaspoon apple cider vinegar
- 1/4 cup unsweetened almond milk or water
- 3/4 cup gluten-free rolled oats
- 1/2 cup almond meal
- 3/4 cup gluten-free flour blend
- 8 to 9 teaspoons strawberry jam
- Extra peanut butter for topping
Instructions
- Preheat your oven to 350°F (176°C). Line a 12-cup muffin pan with paper liners or lightly grease the pan.
- In a large mixing bowl, combine the flaxseed meal and water. Let the mixture sit for about 5 minutes until it thickens into flax eggs.
- Add the maple syrup, coconut sugar, and melted oil. Whisk well until the sugar begins to dissolve.
- Stir in the applesauce, peanut butter, sea salt, baking soda, baking powder, and apple cider vinegar until smooth.
- Pour in the almond milk and whisk again until fully incorporated.
- Add the gluten-free flour blend, almond meal, and rolled oats. Mix gently until everything is just combined. The batter should be thick enough to scoop rather than pour.
- Divide the batter evenly among the prepared muffin cups, filling each about three-quarters full.
- Spoon about 3/4 teaspoon of strawberry jam onto each muffin and add a small dollop of peanut butter. Use a toothpick to gently swirl the toppings into the batter, being careful not to drag the jam all the way to the edges.
- Bake the Peanut Butter and Jelly Muffins for 26 to 32 minutes, or until a toothpick inserted into the center comes out clean.
- Let the muffins cool in the pan for about 20 minutes before carefully transferring them to a wire rack to cool completely.

Tips & Tricks
For the best texture, avoid overmixing the batter once the dry ingredients are added. Natural peanut butter works wonderfully in this recipe, but stir it well before measuring. If you’d like to change the flavor, try raspberry, blueberry, or mixed berry jam instead of strawberry. A sprinkle of chopped roasted peanuts on top before baking adds a delicious crunch.
Details
- Prep Time: 15 minutes
- Cook Time: 26–32 minutes
- Total Time: About 45 minutes
- Yield: 12 muffins
- Category: Breakfast, Snack
- Method: Baking
- Cuisine: American
- Difficulty: Easy
- Dietary Notes: Gluten-Free, Vegan, Dairy-Free

Notes
If gluten-free baking isn’t necessary, you can substitute whole wheat pastry flour or all-purpose flour for the gluten-free flour blend. Honey can replace maple syrup if you don’t need the recipe to be vegan. Crunchy peanut butter creates extra texture, while creamy peanut butter gives the muffins a smoother bite. These muffins are delicious served warm with fresh fruit or an extra spread of peanut butter.
Nutrition (Approximate Per Muffin)
- Calories: 220
- Protein: 6g
- Carbohydrates: 26g
- Fat: 11g
- Fiber: 4g
- Sugar: 10g
Frequently Asked Questions
Can I make these Peanut Butter and Jelly Muffins ahead of time?
Yes. They stay fresh for several days and freeze exceptionally well, making them ideal for meal prep.
Can I use regular flour instead of gluten-free flour?
Absolutely. Whole wheat pastry flour or all-purpose flour both work well with this recipe.
What kind of jam works best?
Naturally sweetened strawberry jam is the traditional choice, but raspberry, blueberry, or mixed berry jam are all delicious alternatives.
Can I make these muffins nut-free?
Yes. Replace the peanut butter with sunflower seed butter and swap the almond meal for oat flour if needed.
Why is the batter so thick?
The thick batter helps create moist, fluffy muffins that hold the jam swirl beautifully during baking.
Storage
Store the muffins in an airtight container at room temperature for up to three days or refrigerate them for up to five days. For longer storage, wrap each muffin individually and freeze for up to three months. To reheat, microwave for 20 to 30 seconds or warm in a 300°F oven for about 8 minutes.

Similar Recipes

Peanut Butter and Jelly Muffins
Ingredients
- 2 tablespoons flaxseed meal
- 5 tablespoons water
- 1/4 cup maple syrup or agave nectar
- 1/3 cup coconut sugar
- 1/4 cup melted coconut oil grapeseed oil, or olive oil
- 3/4 cup unsweetened applesauce
- 1/2 cup creamy or crunchy peanut butter
- 1/4 teaspoon sea salt
- 1 1/2 teaspoons baking soda
- 1/2 teaspoon baking powder
- 1 teaspoon apple cider vinegar
- 1/4 cup unsweetened almond milk or water
- 3/4 cup gluten-free rolled oats
- 1/2 cup almond meal
- 3/4 cup gluten-free flour blend
- 8 –9 teaspoons strawberry jam
- Extra peanut butter for swirling
Instructions
- Preheat the oven to 350°F (176°C). Line a 12-cup muffin pan with paper liners or lightly grease the pan.
- In a large mixing bowl, combine the flaxseed meal and water. Let it sit for about 5 minutes to form flax eggs.
- Add the maple syrup, coconut sugar, and melted oil. Whisk until smooth.
- Stir in the applesauce, peanut butter, sea salt, baking soda, baking powder, and apple cider vinegar until fully combined.
- Mix in the almond milk.
- Fold in the gluten-free flour blend, almond meal, and rolled oats. Stir just until combined. The batter should be thick enough to scoop rather than pour.
- Divide the batter evenly among the muffin cups, filling each about three-quarters full.
- Top each muffin with about 3/4 teaspoon strawberry jam and a small dollop of peanut butter. Use a toothpick to gently swirl the toppings into the batter.
- Bake the Peanut Butter and Jelly Muffins for 26–32 minutes, or until a toothpick inserted into the center comes out mostly clean.
- Allow the muffins to cool in the pan for 20 minutes before transferring them to a cooling rack to cool completely.
Notes
- Whole wheat pastry flour or all-purpose flour can replace the gluten-free flour blend if gluten-free isn’t required.
- Honey can replace maple syrup if a vegan version isn’t needed.
- Crunchy peanut butter adds extra texture.
- Serve warm with fresh fruit or an extra spread of peanut butter.
Conclusion
These Peanut Butter and Jelly Muffins are the perfect combination of nostalgic flavor and wholesome ingredients. They’re soft, satisfying, naturally sweetened, and simple to prepare, making them a wonderful choice for breakfast, snacks, or meal prep. Whether you’re baking for your family or stocking your freezer with homemade treats, this recipe is one you’ll come back to again and again.

